Publications

A list of selected publications. You can find all my articles on my Google Scholar profile.

2025

• [J1] Hanxue Gu*, Haoyu Dong*, Jichen Yang, Maciej A. Mazurowski. How to build the best medical image segmentation algorithm using foundation models: a comprehensive empirical study with Segment Anything Model. MELBA Journal (2025). Paper
• [J2] Roy Colglazier*, Jisoo Lee*, Haoyu Dong*, Hanxue Gu, Yaqian Chen, …, Maciej A. Mazurowski. SegmentAnyMuscle: A universal muscle segmentation model across different locations in MRI. Submitting to The Lancet Digital Health (2025).
• [J3] Haoyu Dong, Hanxue Gu, Yaqian Chen, Jichen Yang, Yuwen Chen, Maciej A. Mazurowski. Segment anything model 2: an application to 2D and 3D medical images. Submitting to IEEE TBME (2025).
• [J4] Haoyu Dong, Yuwen Chen, Hanxue Gu, Nicholas Konz, Yaqian Chen, Qihang Li, Maciej A. Mazurowski. MRI-CORE: A Foundation Model for Magnetic Resonance Imaging. Submitting to Nature Biomedical Engineering (2025).
• [J5] Hanxue Gu, Roy Colglazier, Haoyu Dong, Jikai Zhang, Yaqian Chen, Zafer Yildiz, Yuwen Chen, …, Maciej A. Mazurowski. SegmentAnyBone: A universal model that segments any bone at any location on MRI. Medical Image Analysis (2025).

2024

• [C1] Haoyu Dong, Nicholas Konz, Hanxue Gu, Maciej A. Mazurowski. Medical image segmentation with intent: Integrated entropy weighting for single image test-time adaptation. CVPR Workshops – DEF-AI-MIA (2024). Paper
• [C2] Binxu Li, Tiankai Yan, Yuanting Pan, Zhe Xu, Jie Luo, Ruiyang Ji, Shilong Liu, Haoyu Dong, Zihao Lin, Yixin Wang. MMedAgent: Learning to use medical tools with multi-modal agent. EMNLP (2024). Paper

2023

• [J1] Haoyu Dong, Yifan Zhang, Hanxue Gu, Nicholas Konz, Yixin Zhang, Maciej A. Mazurowski. SWSSL: Sliding window-based self-supervised learning for anomaly detection in high-resolution images. IEEE Transactions on Medical Imaging (2023). Paper
• [J2] Nicholas Konz, Haoyu Dong, Maciej A. Mazurowski. Unsupervised anomaly localization in high-resolution breast scans using deep pluralistic image completion. Medical Image Analysis (2023).
• [J3] Maciej A. Mazurowski†, Haoyu Dong, Hanxue Gu, Jichen Yang, Nicholas Konz, Yixin Zhang. Segment anything model for medical image analysis: an experimental study. Medical Image Analysis (2023).

2022

• [C1] Yifan Zhang, Haoyu Dong, Nicholas Konz, Hanxue Gu, Maciej A. Mazurowski. Lightweight transformer backbone for medical object detection. MICCAI Workshop on Cancer Prevention through Early Detection (2022).
• [C2] Nicholas Konz, Hanxue Gu, Haoyu Dong, Maciej A. Mazurowski. The intrinsic manifolds of radiological images and their role in deep learning. MICCAI (2022).

2021

• [C1] Haoyu Dong, Ze Wang, Qiang Qiu, Guillermo Sapiro. Using text to teach image retrieval. CVPR (2021). Paper